<i>N‐SDM</i> : a high‐performance computing pipeline for Nested Species Distribution Modelling
نویسندگان
چکیده
Predicting contemporary and future species distributions is relevant for science decision making, yet the development of high-resolution spatial predictions numerous taxonomic groups regions limited by scalability available modelling tools. Uniting distribution (SDM) techniques into one high-performance computing (HPC) pipeline, we developed N-SDM, an SDM platform aimed at delivering reproducible outputs standard biodiversity assessments. N-SDM was built around a spatially-nested framework, intended facilitating combined use occurrence data retrieved from multiple sources various scales. allows combining two models fitted with covariate global to regional scales, which useful addressing issue niche truncation. The set state-of-the-art features embodied in includes newly devised selection procedure, five algorithms, algorithm-specific hyperparameter grid search, ensemble small-models approach. designed be run on HPC environments, allowing parallel processing thousands same time. All information required installing running openly GitHub repository https://github.com/N-SDM/N-SDM.
منابع مشابه
Species distribution modelling of invasive alien species; Pterois miles for current distribution and future suitable habitats
The present study aims to predict the potential geographic distribution and future expansion of invasive alien lionfish (Pterois miles) with ecological niche modelling along the Mediterranean Sea. The primary data consisted of occurrence points of P. miles in the Mediterranean and marine climatic data layers were collected from global databases. All the used models run 100% su...
متن کاملFuzzy consequence modelling of hydrocarbon offshore pipeline
The traditional event tree analysis uses a single probability to represent each top event. However, it is unrealistic to evaluate the occurrence of each event by using a crisp value without considering the inherent uncertainty and imprecision a state has. The fuzzy set theory is universally applied to deal with this kind of phenomena. The main purpose of this study is to construct an easy metho...
متن کاملBioMesh3D: A Meshing Pipeline for Biomedical Computing
Biomedical computing applications often follow a computational pipeline: experimental data or image acquisition, mathematical modeling, geometric modeling (segmentation, mesh generation), material modeling, numerical approximation (finite element analysis, linear solvers, nonlinear optimization), visualization (of the geometric model, material model, and solutions), and validation. An important...
متن کاملIncorporating uncertainty in predictive species distribution modelling.
Motivated by the need to solve ecological problems (climate change, habitat fragmentation and biological invasions), there has been increasing interest in species distribution models (SDMs). Predictions from these models inform conservation policy, invasive species management and disease-control measures. However, predictions are subject to uncertainty, the degree and source of which is often u...
متن کاملNew trends in species distribution modelling
N. E. Zimmermann ([email protected]) and P. B. Pearman, Land Use Dynamics, Swiss Federal Research Inst. WSL, Zürcherstrasse 111, CH-8903 Birmensdorf, Switzerland. T. C. Edwards, U.S. Geological Survey, Utah Cooperative Fish and Wildlife Research Unit and Dept of Wildland Resources, Utah State Univ., Logan, UT 84322-5290, USA. C. H. Graham, Dept of Ecology and Evolution, Stony Brook Univ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Ecography
سال: 2023
ISSN: ['0906-7590', '1600-0587']
DOI: https://doi.org/10.1111/ecog.06540